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Software

View our most recent code at github.

MERLIN
An expression-based network inference algorithm that can predict regulators for individual genes and modules.

RIPPLE
A machine learning algorithm for predicting enhancer-promoter interactions

Arboretum
Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules.

NIPD
A multiple network learning approach to capture system-wide condition-specific responses.

RENCO
A synthetic regulatory network generator.

Sysbio Journal Club

Meets biweekly
Mondays at 12:30 pm
Discovery Building, room 3160

We are hiring

Postdoctoral positions in computational network biology and regulatory genomics

Visit our blog:

Just Compiling A space to share thoughts on computational systems biology

News

  • New tool predicts three-dimensional organization of human chromosomes December 9, 2019
  • Vishwesh Presents and Graduates August 28, 2019
  • UW–Madison research team finds new ways to generate stem cells more efficiently May 7, 2019
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