View our most recent code at github.
| MERLIN
An expression-based network inference algorithm that can predict regulators for individual genes and modules. |
RIPPLE A machine learning algorithm for predicting enhancer-promoter interactions |
Arboretum Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules. |
| NIPD A multiple network learning approach to capture system-wide condition-specific responses. |
RENCO A synthetic regulatory network generator. |